Test Code TBCPCR Mycobacterial PCR, UW

Purpose
While Mycobacterium tuberculosis complex members are the most commonly known human pathogens, Non-tuberculosis Mycobacteria (aslo known as environmental mycobacteria, atypical mycobacteria, and mycobacteria other than tuberculosis (MOTT)) are also implicated in tuberculosis-like disease, localized lymphadenitis, gastrointestinal disese, and disseminated infections. Acid fast bacilli can be very difficult to grow due to their nutritional requirements. Some specimens may never reveal the presence of a pathogen because of low abundance and/or lack of viability. The use of PCR to detect Mycobacterial DNA extracted directly from clinical specimens facilitates the identifcation pf these pathogens.
Methodology
DNA extraction, nucleic acid purification, polymerase chain reaction, sequencing.
Sample Type
- Tissue
- Fluid (non-blood)
- Bronchoalveolar lavage (BAL)
- Urine
- Processed sputa
- Gastrointestinal biopsies
Specimen Minimum Volume
1 mL
Specimen Stability
Freeze specimens in sterile container at -20°C.
Rejection Criteria
- Tissues free-floating in formalin
- Samples containing SPS, citrate, or heparin
- Blood/Serum specimens
- Samples collected on swabs
Performing Laboratory
University of Washington Laboratory
CPT Code
87551
87556
LOINC
14974-0 Mycobacterium sp DNA NAA+probe QI (Specimen)
38379-4 M TB Cmplx DNA Spec Ql NAA+probe